DBMI Publications

Mohammadamin Tajgardoon, Malarkodi J. Samayamuthu, Luca Calzoni, Shyam Visweswaran.  Patient-Specific Explanations for Predictions of Clinical Outcomes.  Applied Clinical Informatics (ACI) Journal.  2019; 03(02): e88-e97. DOI: 10.1055/s-0039-1697907.
Travis J De Wolfe, Nasia Safdar, Megan Meller, Patrick R. Pfau, Eric M Nelson, Mark E Benson, Anurag Soni, Mark Reichelderfer, Megan Duster, Deepak V Gopal.  A Prospective, Randomized Comparison of Duodenoscope Reprocessing Surveillance Methods. Canadian Journal of Gastroenterology and Hepatology.  2019; DOI: 10.1155/2019/1959141. 
Mingming Gong, Yanwu Xu, Chuyuan Li, Kun Zhang, Kayhan Batmanghelich.  Twin Auxiliary Classifiers GAN. 33rd Conference on Neural Information Processing Systems (NeurIPS 2019), Vancouver, Canada
M. Minata, A. Audia, J. Shi, S. Lu, J. Bernstock, M. Pavlyukov, A. Das, S.Kim, Y. Shin, Y. Lee, H. Koo, K. Snigdha, I. Waghmare, X. Guo, A. Mohyeldin, D. Gallego-Perez, J. Wang, D. Chen, P. Cheng, F. Mukheef, M. Contreras, J.Reyes, B. Vaillant, E.Sulman, S. Cheng, J. Markert, B.Tannous, X. Lu, M. Kango-Singh, L J. Lee, D. Nam, I. Nakano, K.Bhat. Phenotypic Plasticity of Invasive Edge Glioma Stem-like Cells in Response to Ionizing Radiation. Cell Reports; 2019; 26(7); PMID:30759398.​
X. Fan, S. Zhang *, S. Zhang, K. Zhu, S. Lu*. Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information. BMC Bioinformatics; 2019; 20(87); PMID: 30782113.​
Trivedi G, Dadashzadh ER, Handzel RM, Chapman WW, Visweswaran S, Hochheiser H. Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports. Appl Clin Inform 2019;10:4, 655–69. DOI:https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0039-1695791 PMID: 31486057; PMCID: PMC6727024 [Available on 2020-08-01]
Ceschin R, Zahner A, Reynolds W, Gaesser J, Zuccoli G, Lo CW, Gopalakrishnan V, Panigrahy A. A computational framework for the detection of subcortical brain dysmaturation in neonatal MRI using 3D Convolutional Neural Networks. Neuroimage. 2018 Sep;178:183-197. doi: 10.1016/j.neuroimage.2018.05.049. Epub 2018 May 21. PMID: 29793060.
Lu S, Fan X, Chen L, Lu X. A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Plos One. September 2018; 13(9). https://doi.org/10.1371/journal.pone.0203871. 
Balasubramanian JB, Gopalakrishnan V. Tunable structure priors for Bayesian rule learning for knowledge integrated biomarker discovery.World J Clin Oncol. 2018 Sep 14;9(5): 89-109. doi: 10.5306/wjco.v9.i5.98. PMID: 30254965. PMC ID: PMC6153126.
Jabbari F, Viswewaran S, Cooper GF. Instance-Specific Bayesian Network Structure Learning. Proceedings of the International Conference on Probabilistic Graphical Models (2018) Sep;72:169-180.  PMID: 30775723. PMCID: PMC6376975.