DBMI Publications

HuBMAP Consortium (Writing Group: Snyder MP, Lin S,  Posgai A,  Atkinson M, Regev A, r Rood J, Rozenblatt-Rosen O, Gaffney L, Hupalowska A, Satija R, Gehlenborg G, Shendure J, Laskin J, Harbury P, Nystrom NA, C. Silverstein JC, Bar-Joseph Z, Zhang K, Börner K, Lin Y, Conroy R, Procaccini D, Roy AL, Pillai A, Brown M, Galis ZS.)The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nature. Nature Publishing Group; 2019 Oct 9; 574(7777):187–192. DOI: 10.1038/s41586-019-1629-x, PMID: 31597973; PMCID: PMC6800388.
Marquis-Gravel G, Roe MT., Turakhia MP., Boden W, Temple R, Sharma A, Hirshberg B, Slater P, Craft N, Stockbridge N, McDowell B, Waldstreicher J, Bourla A, Bansilal S, Wong JL., Meunier C, Kassahun H, Coran P, Bataille L, Patrick-Lake B, Hirsch B, Reites J, Mehta R, Muse ED., Chandross KJ., Silverstein JC., Silcox C, Overhage JM, Califf RM., Peterson ED. Technology-Enabled Clinical Trials: Transforming Medical Evidence Generation.. Circulation. American Heart Association; 2019 Oct 22;140(17):1426–1436. PMID: 31634011
  Trivedi G, Dadashzadeh ER, Handzel RM, Chapman WW, Visweswaran S, Hochheiser H. Interactive NLP in clinical care: Identifying incidental findings in radiology reports. Applied Clinical Informatics. 2019 10:04 doi:10.1055/s-0039.1695791. PMID: 31286058 PMCID: PMC6727024
Mtonga TM, Choonara FE, Espino JU, Kachaje C, Kapundi K, Mengezi TE, Mumba SL, Douglas GP. Design and implementation of a clinical Laboratory Information System in a Low Resource Setting. African Journal of Laboratory Medicine.  2019 October 28; 8(1). https://doi.org/10.4102/ajlm.v8i1/841
Strobl EV, Spirtes PL, Visweswaran S.  Estimating and Controlling the False Discovery Rate of the PC Algorithm Using Edge-Specific P-Values.  AMC Transactions on Intelligent Systems and Technology. 2019 Oct 10:10(5):46.
Xu Chi, Maureen A. Sartor, Sanghoon Lee, Meenakshi Anurag, Snehal Patil, Pelle Hall, Matthew Wexler, Xiaosong Wang. Universal concept signature analysis: Genome-wide quantification of anew biological and pathological function of genes and pathways.  Briefings in Bioinformatics.  2019 October; 00(00). https://doi.org/10.1093/bib/bbz093
Schnetz MP, Hochheiser HS, Danks DJ, Landsittel DP, Vogt KM, Ibinson JW, Whitehurst SL, McDermott SP, Duque MG, Kaynar AM. The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. BMC Med Res Methodol. 2019 Jan 14;19(1):17. doi: 10.1186/s12874-019-0660-9. PMID: 30642260. PMCID: PMC6332613.
Radovic A, Li Y, Landsittel D, Stein BD, Miller E. A Social Media Website (Supporting Our Valued Adolescents) to Support Treatment Uptake for Adolescents With Depression and/or Anxiety and Their Parents: Protocol for a Pilot Randomized Controlled Trial. JMIR Res Protoc. 2019 Jan 23;8(1):e12117. doi: 10.2196/12117. PMID: 30672741. PMCID: PMC6264211.
Grizzle AJ, Horn J, Collins C, Schneider J, Malone DC, Stottlemyer B, Boyce RD. Identifying Common Methods Used by Drug Interaction Experts for Finding Evidence About Potential Drug-Drug Interactions: Web-Based Survey. J Med Internet Res. 2019 Jan 4;21(1):e11182. doi:10.2196/11182. PMID: 30609981.
Mohammadamin Tajgardoon, Malarkodi J. Samayamuthu, Luca Calzoni, Shyam Visweswaran.  Patient-Specific Explanations for Predictions of Clinical Outcomes.  Applied Clinical Informatics (ACI) Journal.  2019; 03(02): e88-e97. DOI: 10.1055/s-0039-1697907.