DBMI Publications

Murali A, Bhargava A, Wright ES. IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences. Microbiome. 2018 Aug 9;6(1):140. doi: 10.1186/s40168-018-0521-5. PMID: 30092815. PMCID: PMC6085705.
Fisher AM, Mtonga TM, Espino JU, Jonkman LJ, Connor SE, Cappella NK, Douglas GP. User-centered design and usability testing of RxMAGIC: a prescription management and general inventory control system for free clinic dispensaries. BMC Health Serv Res. 2018 Sep 10;18(1):703. doi: 10.1186/s12913-018-3517-8. PMID: 30200939. PMCID: PMC6131751.
Pangeni RP, Zhang Z, Alvarez AA, Wan X, Sastry N, Lu S, Shi T, Huang T, Lei CX, James CD, Kessler JA, Brennan CW, Nakano I, Lu X, Hu B, Zhang W, Cheng SY. Genome-wide methylomic and transcriptomic analyses identify subtype-specific epigenetic signatures commonly dysregulated in glioma stem cells and glioblastoma. Epigenetics. 2018;13(4):432-448. doi: 10.1080/15592294.2018.1469892. Epub 2018 Aug 6. PMID: 29927689.
Petrov AA, Traister RS, Crespo MM, Silveira FP, Xie M, Coffey K, Ensor CR, Landsittel D, Pilewski JM.A Prospective Observational Study of Hypogammaglobulinemia in the First Year After Lung Transplantation. Transplant Direct. 2018 Jul 12;4(8):e372. doi: 10.1097/TXD.0000000000000811. eCollection 2018 Aug. PMID: 30255132. PMCID: PMC6092181.
Puttarajappa CM, Hariharan S, Humar A, Paliwal Y, Gao X, Cruz RJ, Ganoza AJ, Landsittel D, Bhattarai M, Sogawa H. Outcomes of Adult Intestinal Transplant Recipients Requiring Dialysis and Renal Transplantation. Transplant Direct. 2018 Jul 20;4(8):e377. doi: 10.1097/TXD.0000000000000815. eCollection 2018 Aug. PubMed PMID: 30255137. PMCID: PMC6092176. 
Roth A, Subramanian S, Ganapathiraju MK. Towards extracting supporting information about predicted protein-protein interactions. IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1239-1246. doi: 10.1109/TCBB.2015.2505278. Epub 2015 Dec 7. PubMed PMID: 26672046.
Chen L, Lu X. Making deep learning models transparent. J of Med Artif Intell 2018; 1:5.
Singla S, Gong M, Ravanbakhsh S, Sciurba F, Poszos B, Batmanghelich KN. Subject2Vec: Generative-Discriminative Approach from a Set of Image Patches to a Vector. International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). 2018: 502-510. doi: 10.1007/978-3-030-00928-1_57. PubMed PMID: 30895278. PMCID: PMC6422035.
Fu H, Gong M, Wang C, Batmanghelich K, Tao D. Deep Ordinal Regression Network for Monocular Depth Estimation. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2018 Jun;2018:2002-2011. doi: 10.1109/CVPR.2018.00214. Epub 2018 Dec 17. PubMed PMID: 31274971. PMCID: PMC6607900.
Nagle AM, Levine KM, Tasdemir N, Scott JA, Burlbaugh K, Kehm JW, Katz TA, Boone DN, Jacobsen BM, Atkinson JM, Oesterreich S, Lee AV. Loss of E-cadherin enhances IGF1-IGF1R pathway activation and sensitizes breast cancers to anti-IGF1R/InsR inhibitors. Clin Cancer Res. 2018 Jun 25. pii: clincanres.0279.2018. doi: 10.1158/1078-0432.CCR-18-0279. [Epub ahead of print]. PMID: 29941485.
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