DBMI Publications

Mohammadamin Tajgardoon, Malarkodi J. Samayamuthu, Luca Calzoni, Shyam Visweswaran.  Patient-Specific Explanations for Predictions of Clinical Outcomes.  Applied Clinical Informatics (ACI) Journal.  2019; 03(02): e88-e97. DOI: 10.1055/s-0039-1697907.
Travis J De Wolfe, Nasia Safdar, Megan Meller, Patrick R. Pfau, Eric M Nelson, Mark E Benson, Anurag Soni, Mark Reichelderfer, Megan Duster, Deepak V Gopal.  A Prospective, Randomized Comparison of Duodenoscope Reprocessing Surveillance Methods. Canadian Journal of Gastroenterology and Hepatology.  2019; DOI: 10.1155/2019/1959141. 
Ceschin R, Zahner A, Reynolds W, Gaesser J, Zuccoli G, Lo CW, Gopalakrishnan V, Panigrahy A. A computational framework for the detection of subcortical brain dysmaturation in neonatal MRI using 3D Convolutional Neural Networks. Neuroimage. 2018 Sep;178:183-197. doi: 10.1016/j.neuroimage.2018.05.049. Epub 2018 May 21. PMID: 29793060.
Lu S, Fan X, Chen L, Lu X. A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Plos One. September 2018; 13(9). https://doi.org/10.1371/journal.pone.0203871. 
Balasubramanian JB, Gopalakrishnan V. Tunable structure priors for Bayesian rule learning for knowledge integrated biomarker discovery.World J Clin Oncol. 2018 Sep 14;9(5): 89-109. doi: 10.5306/wjco.v9.i5.98. PMID: 30254965. PMC ID: PMC6153126.
Jabbari F, Viswewaran S, Cooper GF. Instance-Specific Bayesian Network Structure Learning. Proceedings of the International Conference on Probabilistic Graphical Models (2018) Sep;72:169-180.  PMID: 30775723. PMCID: PMC6376975.
Yu X, Liu T, Gong M, Batmanghelich K, Tao D. An Efficient and Provable Approach for Mixture Proportion Estimation Using Linear Independence Assumption. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2018. PMC in process.
Fu H, Gong M, Wang C, Batmanghelich K, Tao D. Deep Ordinal Regression Network for Monocular Depth Estimation. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2018.
Amin W, Linkov F, Landsittel DP, Silverstein JC, Bashara W, Gaudioso C, Feldman MD, Pass HI, Melamed J, Friedberg JS, Becich MJ. Factors influencing malignant mesothelioma survival: a retrospective review of the National Mesothelioma Virtual Bank cohort. F1000Res. 2018 Aug 3;7:1184. doi: 10.12688/f1000research.15512.3. PubMed PMID: 30410729; PubMed Central PMCID: PMC6198263.3.
Murali A, Bhargava A, Wright ES. IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences. Microbiome. 2018 Aug 9;6(1):140. doi: 10.1186/s40168-018-0521-5. PMID: 30092815. PMCID: PMC6085705.
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