Madhavi Ganapathiraju, PhD

Ganapathiraju M, Thahir M, Mitchell AD. Applying N-Gram Language Modeling for Pattern Mining in Whole Genome Sequences. LBM2011: Languages in Biology and Medicine, Singapore, 2011.

Mohamed TP, Carbonell JG, Ganapathiraju MK. Active learning for human protein-protein interaction prediction. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S57. doi: 10.1186/1471-2105-1-S1-S57. PubMed PMID: 20122232. PMCID: PMC3009530.

Osmanbeyoglu HU, Wehner JA, Carbonell JG, Ganapathiraju MK. Active machine learning for transmembrane helix prediction. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S58. doi: 10.1186/1471-2105-11-S1-S58. PubMed PMID: 20122233. PMCID: PMC3009531.

Ganapathiraju M, Balakrishnan N, Reddy R, Klein-Seetharaman J. Transmembrane helix prediction using amino acid properties and latent semantic analysis. BMC Bioinformatics. 2008;9 Suppl 1:S4. doi: 10.1186/1471-2105-9-S1-S4. PubMed PMID: 18315857. PMCID: PMC2259405.

Poddar A, Chandra N, Ganapathiraju M, Sekar K, Klein-Seetharaman J, Reddy R, Balakrishnan N. Evolutionary insights from suffix array-based genome sequence analysis. J. Biosci. 2007 Aug;32(5):871-81. PubMed PMID: 17914229.

Tastan O, Yu E, Ganapathiraju M, Aref A, Rader AJ, Klein-Seetharaman J. Comparison of stability predictions and simulated unfolding of rhodopsin structures. Photochem Photobiol. 2007 Mar-Apr;83(2):351-62. doi: 10.1562/2006-06-20-RA-942. PubMed PMID: 17576347.

Ganapathiraju M, Jursa CJ, Karimi HA, Klein-Seetharaman J. TMpro web server and web service: transmembrane helix production through amino acid property analysis. Bioinformatics. 2007 Oct 15;23(20):2795-6. Epub 2007 Aug 27. doi: 10.1093/bioinformatics/btm398. PubMed PMID: 17724062. PMCID: PMC3263380.

Balajapally P, Pydimarri P, Ganapathiraju M, Balakrishnan N, Reddy R. Multilingual Book Reader: Transliteration, Word-to-Word Translation and Full-text Translation. VALA 2006: 13th Biennial Conference and Exhibition Conference of Victorian Association for Library Automation, Melbourne, Australia, February 8-10, 2006.

Iannaccone A, Man D, Waseem N, Jennings BJ, Ganapathiraju M, Gallaher K, Reese E, Bhattacharya SS, Klein-Seetharaman J. Retinitis pigmentosa associated with rhodopsin mutations: Correlation between phenotypic variability and molecular effects. Vision Res. 2006 Dec;46(27):4556-67. Epub 2006 Oct 2. doi: 10.1016/j.visres.2006.08.018. PubMed PMID: 17014888.

Ganapathiraju M, Levin L.TelMore: Morphological Generator for Telugu Nouns and Verbs. Proc. Second International Conference on Universal Digital Library, Vol Alexandria, Egypt, Nov 17-19, 2006.