DBMI Publications

Xue Y, Cooper GF, Cai C, Lu S, Hu B, Ma X, Lu X. Tumor-specific causal inference discovers distinct disease mechanisms underlying cancer subtypes. Scientific Reports, (2019) doi:10.1038/s41598-019-48318-7
Nguyen BP, Reese T, Decker S, Malone D, Boyce RD, Beyan O. Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. Stud Health Technol Inform. 2019 Aug 21;264:724-728. doi: 10.3233/SHTI190318. PubMed PMID: 31438019.
Pelayo S, Senathirajah Y. Human Factors and Sociotechnical Issues. Year Med Inform. 2019 Aug. doi: 10.1055/s-0039-1677927.
Cai C, Cooper GF, Lu KN, Ma X, Xu S, Zhao Z, Chen X, Xue Y, Lee AV, Clark N, Chen V, Lu S, Chen L, Hochheiser HS, Jiang X, Wang QJ, Lu X.  Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. PLoS Computational Biology. Published online July 5, 2019. doi: 10.137/journal,pcbi.1007088.  PMID: 31276486
Hayek SS, Landsittel DP, Wei C, Zeier M, Yu ASL, Torres VE, Roth S, Pao CS, Reiser J. Soluble Urokinase Plasminogen Activator Receptor and Decline in Kidney Function in Autosomal Dominant Polycystic Kidney Disease. J Am Soc Nephrol. 2019 Jun 6. doi: 10.1681/ASN.2018121227. [Epub ahead of print] PubMed PMID: 31171572.
Moiseeva NT, Yin Y, Calderon MJ, Qian C, Schamus-Haynes S, Sugitani N, Osmanbeyoglu HU, Rothenberg E, Watkins SC, Bakkenist CJ. An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication. Proc Natl Acad Sci U S A. 2019 Jun 17. pii: 201903418. doi: 10.1073/pnas.1903418116. [Epub ahead of print] PubMed PMID: 31209037.
Liang L, Chen V, Zhu K, Fan X, Lu X, Lu S. Integrating data and knowledge to identify functional modules of genes: a multilayer approach. BMC Bioinformatics. 2019 May 2;20(1):225. doi: 10.1186/s12859-019-2800-y. PubMed PMID: 31046665. 
Seymour CW, Kennedy JN, Wang S, Chang CH, Elliott CF, Xu Z, Berry S, Clermont G, Cooper G, Gomez H, Huang DT, Kellum JA, Mi Q, Opal SM, Talisa V, van der Poll T, Visweswaran S, Vodovotz Y, Weiss JC, Yealy DM, Yende S, Angus DC. Derivation, Validation, and Potential Treatment Implications of Novel Clinical Phenotypes for Sepsis. JAMA. 2019 May 19. doi: 10.1001/jama.2019.5791. [Epub ahead of print] PubMed PMID: 31104070.
Birer C, Wright ES. Capturing the complex interplay between drugs and the intestinal microbiome. Clin Pharmacol Ther. 2019 May 18. doi: 10.1002/cpt.1505. [Epub ahead of print] PubMed PMID: 31102465. 
Trivedi G, Hong C, Dadashzadeh ER, Handzel RM, Hochheiser H, Visweswaran S. Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods. International Journal of Medical Informatics. 2019 May. [Epub ahead of print} doi: 10.1016/j.ijmedinf.2019.05.21. 
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