DBMI Publications

Young JD, Andrews B, Cooper GF, Lu X. Learning Latent Causal Structures with a Redundant Input Neural Network. arXiv:2003.13135v1 29 Mar 2020.  
Danielle M Minteer, Patsy Simon, Donald P. Taylor, Wenyan Jia, Yuecheng Li, Mingui Sun, J. Peter Rubin. PUMP: Pressure Ulcer Monitoring Platform – A prospective, human subject clinical study to validate patient repositioning monitoring device to prevent pressure ulcers. Adv Wound Care (New Rochelle). 2020 Jan 1;9(1):28-33. doi: 10.1089/wound.2018.0934. Epub 2019 Dec 6.
Lifan Liang, Kunju Zhu, Songjian Lu. BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. Bioinformatics 2020 Jan 8. pii: btz977. doi: 10.1093/bioinformatics/btz977
Andrew D Hughes, Daqiang Zhao, Hehua Dai, Khodor I. Abou-Daya, Roger Tieu, Rayan Rammal, Amanda L. Williams, Douglas P. Landsittel, Warren D Sclomchik, Adrian E. Morelli, Martin H. Oberbarnscheidt, Fadi G. Lakkis. Cross-dressed dendritic cells sustain effector T cells responses in islet and kidney allographs. J Clin Invest. 2020 Jan 2;130(1):287-294. doi: 10.1172/JCI125773
Erik Scott Wright. RNAconTest: Comparing tools for non-coding RNA multiple sequence alignment based on structural consistency.  RNA. 2020 Jan 31. pii: rna.073015.119. doi: 10.1261/rna.073015.119
Kristin J. Cummings, Michael J. Becich, David J. Blackley, Dennis Deapen, Robert Harrison, Raffit Hassan, S. Jane Henley, Mary Hsdorffer, D. Kevin Horton, Jacek M. Mazurek, Harvey I. Pass, Emanuela Taioli, Xiao-Cheng Wu, Marjorie G. Zauderer, David N. Weissman. Workshop summary: Potential usefulness and feasibility of a US National Mesothelioma Registry. American Journal of Industrial Medicine. 2020 Feb;63(2):105-114. doi: 10.1002/ajim.23062.
Grizzle AJ, Hines LE, Malone DC, Kravchenko O, Hochheiser H, Boyce RD. Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. J Biomed Inform. 2020 Jan;101:103355. doi: 10.1016/j.jbi.2019.103355. Epub 2019 Dec 12. PMID: 31838211; DOI: 10.1016/j.jbi.2019.103355.
Xue Y, Cooper GF, Cai C, Lu S, Hu B, Ma X, Lu X. Tumor-specific causal inference discovers distinct disease mechanisms underlying cancer subtypes. Scientific Reports, (2019) doi:10.1038/s41598-019-48318-7
Y Liu, J Manners, Y Bittar, SHY Chou, V Gopalakrishnan. Towards precision critical care management of blood pressure in hemorrhagic stroke patients using dynamic linear models.  PLoS One 2019;14(8): e0220283.
Andrews B, Ramsey J, Cooper GF.  Learning high-dimensional directed acyclic graphs with mixed data-types. Proceedings of Machine Learning Research 2019 Aug; 104: 4-21. PMID: 31453569 PMCID: PMC6709674