DBMI Publications

Sergio M. Castro, Eugene Tseytlin, Olga Medvedeva, Kevin Mitchell, Shyam Visweswaran, Tanja Bekhuis, Rebecca S. Jacobson, Automated annotation and classification of BI-RADS assessment from radiology reports, Journal of Biomedical Informatics, Volume 69, May 2017, Pages 177-187, ISSN 1532-0464, https://doi.org/10.1016/j.jbi.2017.04.011. (http://www.sciencedirect.com/science/article/pii/S1532046417300813)  
Chattopadhyay, A.; Ganapathiraju, M.K. Demonstration Study: A Protocol to Combine Online Tools and Databases for Identifying Potentially Repurposable Drugs. Data 2017, 2, 15.
X Liu, H Yagi, S Saeed, AS Bais, GC Gabriel, Z Chen, M Ganapathiraju… The complex genetics of hypoplastic left heart syndrome, Nature Genetics, 2017, http://dx.doi.org/10.1038/ng.3870
Jose D. Posada, Amie J. Barda, Lingyun Shi, Diyang Xue, Victor Ruiz, Pei-Han Kuan, Neal D. Ryan, Fuchiang (Rich) Tsui. Predictive Modeling for Classification of Positive Valence System Symptom Severity from Initial Psychiatric Evaluation Records, Journal of Biomedical Informatics, 29 May 2017, https://doi.org/10.1016/j.jbi.2017.05.019
Wright ES., Getting my feet wet., Science. 2017 Apr 7;356(6333):106. doi: 10.1126/science.356.6333.106. PMID: 28386014
Ye Y, Wagner MM, Cooper GF, Ferraro JP, Su H, Gesteland PH, Haug PJ, Millett NE, Aronis JM, Nowalk AJ, Ruiz VM, López Pineda A, Shi L, Van Bree R, Ginter T, Tsui F. A study of the transferability of influenza case detection systems between two large healthcare systems. PLoS One (2017) Apr 5;12(4):e0174970. doi: 10.1371/journal.pone.0174970. eCollection 2017. PMID: 28380048 PMCID: PMC5381795
King AJ, Fisher AM, Becich MJ, Boone DN. Computer science, biology and biomedical informatics academy: outcomes from 5 years of immersing high-school students into informatics research. J Pathol Inform [serial online] 2017 [cited 2017 Mar 1];8:2. Available from: http://www.jpathinformatics.org/text.asp?2017/8/1/2/201110
Vicky Chen, John Paisley and  Xinghua Lu.  Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling.  BMC Genomics 2017 18(Suppl2):105. DOI: 10.1186/s12864-017-3494-z BMC Genomics Article
Lustgarten JL, Balasubramanian JB, Visweswaran S, Gopalakrishnan V, Learning Parsimonious Classification Rules from Gene Expression Data Using Bayesian Networks with Local Structure.  2017 Mar;2(1). pii: 5. doi: 10.3390/data2010005. Epub 2017 Jan 18.    PMID: 28331847  PMCID:  PMC5358670  DOI: 10.3390/data2010005
King AJ, Hochheiser, Visweswaran S, Clermont G, Cooper GF. Eye-tracking for clinical decision support: A method to capture automatically what physicians are viewing in the EMR. Proceedings of the AMIA Joint Summit on Translational Science (2017).